TOPDOM: Conservatively Located Domains and Motifs in Proteins

Manuscript

Varga J, Dobson L and Tusnády GE (2016)
TOPDOM: database of topologically consistently located protein domains and motifs.
Bioinformatics 32, 2725-2726.
[Journal] [Medline] [PDF] [Server]
Tusnády GE, Kalmár L, Hegyi H, Tompa P and Simon I (2008)
TOPDOM: database of domains and motifs with conservative location in transmembrane proteins.
Bioinformatics 24, 1469-1470.
[Journal] [Medline] [PDF]

Related manuscripts

Dobson L, Reményi I, Tusnády GE (2015)
The human transmembrane proteome.
Biol Direct. 10:31.
[Journal] [Medline] [PDF] [Server]
Dobson L, Reményi I, Tusnády GE (2015)
CCTOP: a Consensus Constrained TOPology prediction web server.
Nucleic Acids Res. 43(W1), W408-12.
[Journal] [Medline] [PDF] [Server]
Dobson L, Langó T, Reményi I, Tusnády GE (2015)
Expediting topology data gathering for the TOPDB database.
Nucleic Acids Res. 43(Database issue), D283-9.
[Journal] [Medline] [PDF] [Server]
Kozma D, Simon I, Tusnády GE (2013)
PDBTM: Protein Data Bank of transmembrane proteins after 8 years.
Nucleic Acids Res. 41(Database issue), D524-9
[Journal] [Medline] [PDF] [Server]
Tusnády GE, Kalmár L and Simon I (2008)
TOPDB: Topology Data Bank of Transmembrane Proteins.
Nucleic Acids Res 36, D234-9.
[Journal] [Medline] [PDF] [Server]
Gardy JL, Spencer C, Wang K, Ester M, Tusnády GE, Simon I, Hua S, deFays K, Lambert C, Nakai K and Brinkman FS (2003)
PSORT-B: improving protein subcellular localization prediction for Gram-negative bacteria.
Nucleic Acids Res 31, 3613-3617.
[Journal] [Medline] [PDF] [Server]
Dosztányi Zs, Magyar Cs, Tusnády GE, Cserző M, Fiser A and Simon I (2003)
Servers for sequence-structure relationship analysis and prediction.
Nucleic Acids Res 31, 3359-3363.
[Journal] [Medline] [PDF] [Servers]
Tusnády GE, Dosztányi Zs and Simon I (2004)
Transmembrane proteins in protein data bank: identification and classification.
Bioinformatics 20, 2964-2972.
[Journal] [Medline] [PDF] [Server]
Tusnády GE, Dosztányi Zs and Simon I (2005)
TMDET: web server for detecting transmembrane domains by using 3D structure of proteins
Bioinformatics 21, 1276-7.
[Journal] [Medline] [PDF] [Server]
Tusnády GE, Dosztányi Zs and Simon I (2005)
PDB_TM: selection and membrane localization of transmembrane proteins in the Protein Data Bank.
Nucleic Acids Research 33 Database Issue, D275-D278.
[Journal] [Medline] [PDF] [Server]

Statistics

Visitors
359317
Entries
6232
Pfam
3930
Prints
589
Prosite
1375
Smart
338
UniProt
195371
Inside
4440
Outside
1792
Transmem
1331
Search by sq
1109228
Search by kw
5666
Search by id
12403